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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015852748.1_cds_XP_016511959.1_24648
CDS Infomation

[gene=LOC107829052] [db_xref=GeneID:107829052] [protein=vacuolar-sorting receptor 1-like] [protein_id=XP_016511959.1] [location=complement(join(55263..55358,56046..56152,56402..56530,56837..56903,57128..57210,57331..57412,57522..57598,58053..58136,58220..58289,58383..58471,59327..60019,60706..61000))] [gbkey=CDS]
Sequence

ATGAAAGGAAATTTAGGGTTTCTAGTGTGTATTTTGTGTGTGCTGTCTGGGTCTTGTTTG
GGTAGATTTGTGGTGGAGAAGAACAGCTTGAGAGTAACGTCACCAAGCTCAATCAAAGAT
GTGTATGAGTGTGCGATTGGGAACTTTGGGGTCCCACAATATGGAGGAACCATGGTTGGT
ATTGTTATGTACCCAAAAGCTAATCAAAAGTCTTGTAAGAATTTTACAGATTTTGATATC
TCCTTCAAATCTAAGCCTGGTGCCATGCCTGTCTTCCTTCTTGTTGATAGAGGAGATTGC
TATTTCACACTGAAGGCTTGGAATGCTCAGAGAGCTGGAGCAGGCGCTATTCTTGTTGCT
GATGACCGTGTTGAACCTTTAATTACCATGGACACCCCTGAGGAAGAGGATGCACAGGCA
GATTATTTGCAAAATATAACTATTCCATCGGCTTTAATTAGCAAATCCCTTGGGGATAGC
ATCAAGAAGGAACTCTCTAGAGGAGAAATGGTTAACATAAACCTCGATTGGAGAGAGGCT
CTTCCGCATCCTGATGAACGAGTGGAGTATGAATTTTGGACCAACAGTAATGATGAGTGT
GGCCCCAAGTGTGAAAGCCAGATAGAGTTTGTCAAAAACTTCAAAGGGGCTGCCCAGATA
CTTGAGCAGAAGGGTTATACACAGTTTACTCCCCATTACATAACTTGGTATTGCCCAGAG
GCTTTTATTTTGAGCAAGCAATGCAAGTCTCAGTGCATCAATCATGGCAGATACTGTGCT
CCAGACCCTGAGCAAGACTTCAGTAAAGGTTATGATGGAAAGGATGTTGTTCTGCAAAAC
TTAAGGCAGGCTTGTTTTTTCAAGGTTGCCAATGAAAGTGGAAAACCCTGGATGTGGTGG
GATTATGTCACTGACTTTGCAATACGGTGCCCCATGAAAGAGAAGAAATACACGACAGAA
TGTGCAGATCAAGTAATTAAGTCACTTGGCTTTGACGTCAAACAGATTGAAAAATGTGTT
GGAGATCCTGAAGCAGATACTGACAACCCTGTTCTAAAGGCTGAACAGGATTCGCAGATA
GGCAAGGGTGCTCGTGGAGATGTGACTATCTTGCCAACTCTGGTTATAAACAATAGACAG
TACAGAGGTAAGCTGGACAAAGGAGCAGTCCTCAAGGCGATTTGTTCAGGTTTTGAGGAG
ACAACAGAGCCTGCAATTTGCTTAACTGAAGAAATAGAAACAAATGAATGCTTAGAATCA
AATGGTGGGTGCTGGCAGGACAAGGCTGCTAACATTACTGCGTGCCGGGATACTTTCCGT
GGTAGAGTATGTGAATGCCCCATAGTTCAAGGAGTAAAATTTGTTGGTGATGGTTATACT
CACTGCGAAGCATCTGGAGCATTGCGATGTGAAATAAACAATGGAGGCTGTTGGAAGGGG
ACTCAAGATGGCAGGGCATATTCTGCTTGCATTGATGATCACACAAAGGGTTGCAAATGT
CCACCAGGATTCAAAGGTGATGGAGTGAACAGTTGTGAAGATATTGATGAATGCAAGGAG
AAGCTGGCATGCCAGTGTCCTGCGTGCAAATGCAAGAACACTTGGGGTAGTTTTGATTGC
AGTTGCGGCGGCAATTTGTTGTACATGCATGAACATGACACGTGTATAAGCAAAGATTCC
AAGTCAGAGTTCAGCTGGGGCCTTGTTTGGACTATCATCTTGGGTTTGGCAGTTGCAGTG
GTTGTAGGATATGCTGTATACAAGTATAGGATTCGGAGATACATGGACTCAGAGATTCGC
GCCATCATGGCACAATATATGCCTTTGGATCAAGGAGAGGGGGCAAATCATGTTTCCCAT
GGGAACGTCTAA

Peptide Sequence

PEP ID

XP_016511959.1
PEP Infomation

PREDICTED: vacuolar-sorting receptor 1-like [Nicotiana tabacum]
Sequence

MKGNLGFLVCILCVLSGSCLGRFVVEKNSLRVTSPSSIKDVYECAIGNFGVPQYGGTMVG
IVMYPKANQKSCKNFTDFDISFKSKPGAMPVFLLVDRGDCYFTLKAWNAQRAGAGAILVA
DDRVEPLITMDTPEEEDAQADYLQNITIPSALISKSLGDSIKKELSRGEMVNINLDWREA
LPHPDERVEYEFWTNSNDECGPKCESQIEFVKNFKGAAQILEQKGYTQFTPHYITWYCPE
AFILSKQCKSQCINHGRYCAPDPEQDFSKGYDGKDVVLQNLRQACFFKVANESGKPWMWW
DYVTDFAIRCPMKEKKYTTECADQVIKSLGFDVKQIEKCVGDPEADTDNPVLKAEQDSQI
GKGARGDVTILPTLVINNRQYRGKLDKGAVLKAICSGFEETTEPAICLTEEIETNECLES
NGGCWQDKAANITACRDTFRGRVCECPIVQGVKFVGDGYTHCEASGALRCEINNGGCWKG
TQDGRAYSACIDDHTKGCKCPPGFKGDGVNSCEDIDECKEKLACQCPACKCKNTWGSFDC
SCGGNLLYMHEHDTCISKDSKSEFSWGLVWTIILGLAVAVVVGYAVYKYRIRRYMDSEIR
AIMAQYMPLDQGEGANHVSHGNV

Transcript Sequence

Gene sequence data has not been registered.